[1]祝志慧，汤 勇，洪 琪，黄 飘，王巧华，马美湖*，基于种蛋图像血线特征和深度置信网络的早期鸡胚雌雄识别。农业工程学报，2018,34(6):197-203.
[2]Zhu Zhihui, Li wanqing, Wang Qiaohua, Tang yong, Cao Fanlong, Ma Rui.Online Discriminant Model of Blood Spot Eggs Based on Spectroscopy. Journal of Food Process Engineering ISSN 1745–4530,2016,
[3]Zhu Zhihui, Liu Ting, Xie Dejun, Wang Qiaohua, Ma Meihu*.Nondestructive detection of infertile hatching eggs based on spectral and imaging information. International Journal of Agricultural and Biological Engineering. 2015,8,(4): 69-76
[4]祝志慧，刘婷，马美湖*. 基于高光谱信息融合和相关向量机的种蛋无损检测. 农业工程学报，2015,31(15):285-292
[5]祝志慧，谢德君，李婉清，王巧华，马美湖*. 基于光谱技术和多分类器融合的异物蛋检测的研究. 农业工程学报，2015,31（2）:312-318
[6]Zhihui Zhu, Ting Liu,Lirong Xiong,Meihu MA*.Identification of the Hatching Egg before the Incubation Based on Hyperspectral Imaging and GA-BP Network.  Computer Modelling and New Technologies. 2014， 18(11) 388-393
[7]祝志慧，王巧华，王树才，戴明钰，马美湖*.基于近红外光谱的孵前种蛋检测.光谱学与光谱分析.2012,32(4): 962-965. 
[8]祝志慧，孙云莲*. 改进的人工免疫分类算法在故障类型识别中的应用. 电力系统保护与控制.2011,39(10):80-85 
[9]Zhu Zhihui，Sun Yunlian*. Fault Location in Power Transmission Line Based on ISVR. 2010 2nd International Conference on Industrial Mechatronics and Automation. 2010:514-517.
[10]祝志慧，孙云莲*. 量子免疫算法在电网故障诊断中的应用. 电力系统保护与控制. 2010,38(10):22-25,30.
[11]Zhu Zhihui，Sun Yunlian*. Application of Quantum Immune Algorithm for Fault-section Estimation. 2009 The 2nd Conference on Power Electronics and Intelligent Transportation System. Shenzhen,December19-20.2009: 317 - 320 
[12]Zhu Zhihui，Sun Yunlian*. Transmission Line Fault Classification Based on Wavelet Singular Entropy and Artificial Immune Recognition System Algorithm. 2009 The 2nd Conference on Power Electronics and Intelligent Transportation System. Shenzhen, December 19-20. 
[13]祝志慧，孙云莲*. 基于EMD的时频分析方法的电力故障信号检测. 武汉大学学报. 2007, 40(5): 119-122.
[14]祝志慧，孙云莲*. 基于经验模式分解和最小二乘支持向量机的短期负荷预测. 继电器, 2007, 35(08): 37-40.
[15]祝志慧，孙云莲*. 基于EMD和SVM的短期负荷预测. 高电压技术, 2007, 33(5): 118-122. 
[16]祝志慧，孙云莲*. 基于EMD近似熵和SVM的电力线路故障类型识别. 电力自动化设备, 2008, 28(7): 81-84.
[17]Zhu Zhihui，Sun Yunlian*. Application of EMD and SVD in Fault Identification.8th International Power Engineering Conference. Singapore. 2007, 1247-1250. 
[18]Zhu Zhihui，Sun Yunlian*. Hybrid of EMD and SVMs for Short-Term Load Forecasting. 2007 IEEE International Conference on Control and Automation, Guangzhou. 2007, 1044-1047. 
著作类
（1）《机械工程测试技术》主编，华中科技大学出版社，2017-06-01 ISBN：9787568025164 
（2）《自动控制原理》副主编，华中科技大学出版社，2012-5-1，ISBN：9787560977430
专利、软件类 发明专利
[1] 一种基于光谱复制空间转换的血斑蛋在线无损检测方法, ZL201710245494.3,祝志慧、汤勇、向英杰、王巧华、马美湖
[2]基于特征波段的血斑蛋在线检测方法, ZL2016041800193770,祝志慧；李婉清；王巧华；马美湖；曹凡龙
[3]血斑蛋在线无损检测分选设备及其方法, ZL201310063885.5，祝志慧,林祥,马美湖,王巧华,吴兰兰,胡双得,侯鹏飞,刘磊,陈文凯
[4] 皮蛋、咸蛋多场耦合高效自动化腌制装置及控制方法, ZL201010549311.5，马美湖,王树才,祝志慧,王石泉,江应红.
[5] 孵化蛋品质在线自动检测分选设备及其方法, ZL201110141073.9，王巧华,李益民,祝志慧,陈飞,朱涛,李敏,叶涛.
软件
[1]异物蛋实时在线检测软件 2015SR096123
[2]血斑蛋在线无损检测软件1.0 2017SR019990  
[3]缺陷蛋无损检测软件2.0 2017SR537988
[4]孵化蛋信息视觉无损检测软件1.0 2018SR310540
[5]柑橘含水率检测软件1.0 2019SR0271159
[6]无精蛋无损检测软件1.0 2019SR0154546
[7]鸡胚蛋性别检测软件 2019SR0834628